Nir Friedman

Nir Friedman Nir Friedman



	Nir Friedman
	Professor
	The Rachel and Selim Benin School of Computer Science and Engineering The Alexander Silberman Institute of Life Sciences The Hebrew University of Jerusalem Jerusalem 9190401 Israel				+972-2-549-4557 (Office) +972-2-549-4662 (Admin) +972-2-658-4295 (Lab) nir.friedman@mail.huji.ac.il

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Publications

Dissertations

Tools and Resources

SEMPHY: Structural EM Phylogenetic Reconstruction
- A tool for data-intensive phylogenetic reconstruction
ScoreGenes: Statistical Analysis of Gene Expression Patterns
- A data analysis toolkit designed for large sets of gene expression profiles
GeneXPress: Visualization and Interpretation of Gene Expression Patterns
- A visualization and analysis tool for gene expression data, integrating clustering, gene annotation, and sequence information
LibB: Learning Bayesian Networks
- A a tool for learning Bayesian network learning
Predicting Zinc Finger Binding Preferences
- Ab initio prediction of binding preferences based on protein sequence
SNAP: A Discriminative Motif Discovery & Analysis Tool
Modeling Dependencies in Protein-DNA Binding Sites
The Bayesian Network Repository
- A repository of Bayesian networks
BLiC - A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval